IL_6YSI_023

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

6YSI|1|1|G|767, 6YSI|1|1|A|779, 6YSI|1|1|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_023 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.1058

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6YSI|1|1|G|766
6YSI|1|1|G|767
6YSI|1|1|G|768
*
6YSI|1|1|U|778
6YSI|1|1|A|779
6YSI|1|1|A|780
6YSI|1|1|U|781
6YSI|1|1|C|782

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain O

50S ribosomal protein L22

Chain Z

50S ribosomal protein L34