IL_6YSI_026
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_026 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.0594
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YSI|1|1|G|847
6YSI|1|1|G|848
6YSI|1|1|G|849
6YSI|1|1|G|850
6YSI|1|1|U|851
6YSI|1|1|A|852
6YSI|1|1|G|853
*
6YSI|1|1|C|906
6YSI|1|1|G|907
6YSI|1|1|A|908
6YSI|1|1|A|909
6YSI|1|1|U|910
6YSI|1|1|A|911
6YSI|1|1|C|912
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain I
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L27
- Chain V
- 50S ribosomal protein L30
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