IL_6YSI_039
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6YSI|1|1|U|1199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_039 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.0684
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
6YSI|1|1|C|1196
6YSI|1|1|G|1197
6YSI|1|1|A|1198
6YSI|1|1|U|1199
6YSI|1|1|G|1200
6YSI|1|1|A|1201
6YSI|1|1|A|1202
6YSI|1|1|G|1203
*
6YSI|1|1|U|1222
6YSI|1|1|G|1223
6YSI|1|1|G|1224
6YSI|1|1|A|1225
6YSI|1|1|G|1226
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L20
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