IL_6YSI_047

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

6YSI|1|1|U|1550

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_047 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2109

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6YSI|1|1|G|1420
6YSI|1|1|A|1421
6YSI|1|1|A|1422
6YSI|1|1|G|1423
*
6YSI|1|1|C|1548
6YSI|1|1|A|1549
6YSI|1|1|U|1550
6YSI|1|1|G|1551
6YSI|1|1|C|1552

Current chains

Chain 1

23S ribosomal RNA

Nearby chains