IL_6YSI_087
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CCUCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_087 not in the Motif Atlas
- Homologous match to IL_7RQB_104
- Geometric discrepancy: 0.0772
- The information below is about IL_7RQB_104
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
6YSI|1|1|C|2669
6YSI|1|1|C|2670
6YSI|1|1|U|2671
6YSI|1|1|C|2672
6YSI|1|1|U|2673
*
6YSI|1|1|A|2714
6YSI|1|1|U|2715
6YSI|1|1|G|2716
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L14
- Chain J
- 50S ribosomal protein L17
- Chain L
- 50S ribosomal protein L19
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