IL_6YSI_102
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUAAUUGAUG*UUGAUCGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_102 not in the Motif Atlas
- Homologous match to IL_5J7L_387
- Geometric discrepancy: 0.0778
- The information below is about IL_5J7L_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61249.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YSI|1|1|U|1840
6YSI|1|1|U|1841
6YSI|1|1|A|1842
6YSI|1|1|A|1843
6YSI|1|1|U|1844
6YSI|1|1|U|1845
6YSI|1|1|G|1846
6YSI|1|1|A|1847
6YSI|1|1|U|1848
6YSI|1|1|G|1849
*
6YSI|1|1|U|1871
6YSI|1|1|U|1872
6YSI|1|1|G|1873
6YSI|1|1|A|1874
6YSI|1|1|U|1875
6YSI|1|1|C|1876
6YSI|1|1|G|1877
6YSI|1|1|A|1878
6YSI|1|1|A|1879
6YSI|1|1|G|1880
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain 8
- Transfer RNA; tRNA
Coloring options: