IL_6YSR_016

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6YSR|1|A|G|801, 6YSR|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSR_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0812

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6YSR|1|A|G|674
6YSR|1|A|A|675
6YSR|1|A|A|676
6YSR|1|A|A|677
6YSR|1|A|C|678
*
6YSR|1|A|G|799
6YSR|1|A|A|800
6YSR|1|A|G|801
6YSR|1|A|A|802
6YSR|1|A|U|803
6YSR|1|A|A|804
6YSR|1|A|G|805
6YSR|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15