IL_6YSR_171

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSR_171 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1414

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6YSR|1|a|C|1303
6YSR|1|a|G|1304
6YSR|1|a|G|1305
6YSR|1|a|A|1306
6YSR|1|a|U|1307
6YSR|1|a|U|1308
*
6YSR|1|a|A|1329
6YSR|1|a|U|1330
6YSR|1|a|G|1331
6YSR|1|a|A|1332
6YSR|1|a|A|1333
6YSR|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13