IL_6YSR_182

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSR_182 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0977

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6YSR|1|A|U|1851
6YSR|1|A|U|1852
6YSR|1|A|A|1853
6YSR|1|A|A|1854
6YSR|1|A|U|1855
6YSR|1|A|U|1856
6YSR|1|A|G|1857
6YSR|1|A|A|1858
6YSR|1|A|U|1859
6YSR|1|A|G|1860
*
6YSR|1|A|U|1882
6YSR|1|A|U|1883
6YSR|1|A|G|1884
6YSR|1|A|A|1885
6YSR|1|A|U|1886
6YSR|1|A|C|1887
6YSR|1|A|G|1888
6YSR|1|A|A|1889
6YSR|1|A|A|1890
6YSR|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2