IL_6YSS_096

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSS_096 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0873

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6YSS|1|A|C|2652
6YSS|1|A|U|2653
6YSS|1|A|A|2654
6YSS|1|A|G|2655
6YSS|1|A|U|2656
6YSS|1|A|A|2657
6YSS|1|A|C|2658
*
6YSS|1|A|G|2663
6YSS|1|A|G|2664
6YSS|1|A|A|2665
6YSS|1|A|C|2666
6YSS|1|A|C|2667
6YSS|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6