IL_6YSS_132

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSS_132 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.129

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6YSS|1|a|G|450
6YSS|1|a|A|451
6YSS|1|a|A|452
6YSS|1|a|G|453
6YSS|1|a|G|454
6YSS|1|a|G|455
*
6YSS|1|a|C|477
6YSS|1|a|A|478
6YSS|1|a|U|479
6YSS|1|a|U|480
6YSS|1|a|G|481
6YSS|1|a|A|482
6YSS|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16