IL_6YSS_135
3D structure
- PDB id
- 6YSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6YSS|1|a|A|532, 6YSS|1|a|U|534, 6YSS|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSS_135 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1259
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YSS|1|a|G|515
6YSS|1|a|PSU|516
6YSS|1|a|G|517
6YSS|1|a|C|518
6YSS|1|a|C|519
6YSS|1|a|A|520
6YSS|1|a|G|521
*
6YSS|1|a|C|528
6YSS|1|a|G|529
6YSS|1|a|G|530
6YSS|1|a|U|531
6YSS|1|a|A|532
6YSS|1|a|A|533
6YSS|1|a|U|534
6YSS|1|a|A|535
6YSS|1|a|C|536
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain y
- Alternative stalled-ribosome rescue factor B
Coloring options: