IL_6YST_062

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6YST|1|A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_062 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.0992

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6YST|1|A|A|1669
6YST|1|A|C|1670
6YST|1|A|U|1671
6YST|1|A|A|1672
6YST|1|A|G|1673
6YST|1|A|G|1674
*
6YST|1|A|C|1990
6YST|1|A|U|1991
6YST|1|A|G|1992
6YST|1|A|U|1993

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14