IL_6YST_178

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_178 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1423

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6YST|1|A|U|1720
6YST|1|A|G|1721
6YST|1|A|A|1722
6YST|1|A|G|1723
6YST|1|A|G|1724
*
6YST|1|A|U|1736
6YST|1|A|G|1737
6YST|1|A|G|1738
6YST|1|A|A|1739
6YST|1|A|G|1740

Current chains

Chain A

23S ribosomal RNA

Nearby chains