IL_6YST_187

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGC*GUAG

Length

7 nucleotides

Bulged bases

6YST|1|B|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_187 not in the Motif Atlas

Homologous match to IL_7A0S_112

Geometric discrepancy: 0.33

The information below is about IL_7A0S_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6YST|1|B|C|17
6YST|1|B|G|18
6YST|1|B|C|19
*
6YST|1|B|G|64
6YST|1|B|U|65
6YST|1|B|A|66
6YST|1|B|G|67

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA