IL_6YSU_135

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSU_135 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.2223

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6YSU|1|a|G|450
6YSU|1|a|A|451
6YSU|1|a|A|452
6YSU|1|a|G|453
6YSU|1|a|G|454
6YSU|1|a|G|455
*
6YSU|1|a|C|477
6YSU|1|a|A|478
6YSU|1|a|U|479
6YSU|1|a|U|480
6YSU|1|a|G|481
6YSU|1|a|A|482
6YSU|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16