IL_6YSU_184

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSU_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1236

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6YSU|1|A|U|1851
6YSU|1|A|U|1852
6YSU|1|A|A|1853
6YSU|1|A|A|1854
6YSU|1|A|U|1855
6YSU|1|A|U|1856
6YSU|1|A|G|1857
6YSU|1|A|A|1858
6YSU|1|A|U|1859
6YSU|1|A|G|1860
*
6YSU|1|A|U|1882
6YSU|1|A|U|1883
6YSU|1|A|G|1884
6YSU|1|A|A|1885
6YSU|1|A|U|1886
6YSU|1|A|C|1887
6YSU|1|A|G|1888
6YSU|1|A|A|1889
6YSU|1|A|A|1890
6YSU|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains