IL_6YSU_206

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

6YSU|1|a|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSU_206 not in the Motif Atlas

Homologous match to IL_4LFB_069

Geometric discrepancy: 0.5908

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6YSU|1|a|5MC|1407
6YSU|1|a|A|1408
6YSU|1|a|C|1409
*
6YSU|1|a|G|1491
6YSU|1|a|A|1492
6YSU|1|a|A|1493
6YSU|1|a|G|1494

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12

Chain y

Alternative stalled-ribosome rescue factor B