IL_6YTF_003

3D structure

PDB id

6YTF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YTF_003 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.2219

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6YTF|1|3|G|990
6YTF|1|3|A|991
6YTF|1|3|C|992
6YTF|1|3|A|993
6YTF|1|3|U|994
*
6YTF|1|3|A|1041
6YTF|1|3|C|1042

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S14