RNA 3D Hub //

6YTF Hairpin, Internal, and multi-helix Junction Loop Motifs

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Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6YTF_0011/3/960:969No text annotation
homologous
HL_5J7L_021
NA
HL_6YTF_0021/3/1009:1014GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_6YTF_0031/3/1073:1078GNRA
homologous
HL_5J7L_023
NA
HL_6YTF_0041/3/1086:1093T-loop related
homologous
HL_5J7L_024
NA
HL_6YTF_0051/3/1131:1137No text annotation
homologous
HL_4LFB_026
HL_92935.1
HL_6YTF_0061/3/1162:1168GNRA
homologous
HL_4LFB_027
HL_34789.1
HL_6YTF_0071/3/1262:1267GNRA
homologous
HL_4LFB_028
HL_34789.1
HL_6YTF_0081/3/1311:1320T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_6YTF_0091/3/1353:1363No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_6YTF_0101/7/31:39tRNA anticodon loop
homologous
HL_3TUP_002
HL_81376.1

Problematic loops

#loop idProblemSequence
HL_6YTF_011No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6YTF_0011/3/930:932,
1/3/1377:1381		Minor groove platform
homologous
IL_5J7L_041
NA
IL_6YTF_0021/3/950:951,
1/3/1223:1225		Minor groove platform
homologous
IL_4LFB_038
IL_34520.1
IL_6YTF_0031/3/990:994,
1/3/1041:1042		Minor groove platform
geometric
IL_4LFB_039
IL_61370.1
IL_6YTF_0211/3/995:996,
1/3/1038:1040		Single stack bend
homologous
IL_5J7L_044
NA
IL_6YTF_0061/3/1003:1006,
1/3/1017:1020		Tandem non-canonical cWW pairs
geometric
IL_280D_001
NA
IL_6YTF_0071/3/1045:1047,
1/3/1205:1206		Single bulged U
homologous
IL_5J7L_046
NA
IL_6YTF_0201/3/1049:1053,
1/3/1201:1203		No text annotation
homologous
IL_6CZR_154
NA
IL_6YTF_0091/3/1054:1055,
1/3/1196:1200		Minor groove platform
homologous
IL_5J7L_048
NA
IL_6YTF_0101/3/1057:1058,
1/3/1192:1194		Single bulged A
geometric
IL_5J7L_049
NA
IL_6YTF_0111/3/1058:1060,
1/3/1190:1192		Isolated non-canonical cWW pair
homologous
IL_5J7L_050
NA
IL_6YTF_0121/3/1120:1125,
1/3/1141:1147		No text annotation
IL_6YTF_0131/3/1126:1129,
1/3/1139:1140		Minor groove platform
homologous
IL_5J7L_052
NA
IL_6YTF_0141/3/1155:1158,
1/3/1172:1178		No text annotation
homologous
IL_4LFB_050
IL_32376.1
IL_6YTF_0151/3/1244:1250,
1/3/1281:1287		No text annotation
homologous
IL_4LFB_051
IL_12056.1
IL_6YTF_0161/3/1252:1255,
1/3/1274:1279		180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_6YTF_0171/3/1256:1259,
1/3/1270:1273		Tandem non-canonical cWW pairs
geometric
IL_4V88_461
NA
IL_6YTF_0181/3/1300:1305,
1/3/1326:1331		No text annotation
homologous
IL_5J7L_057
NA

Problematic loops

#loop idProblemSequence
IL_6YTF_004No text annotation
IL_6YTF_005No text annotation
IL_6YTF_008Tandem non-canonical cWW pairs
IL_6YTF_019No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6YTF_0011/3/933:936,
1/3/1341:1347,
1/3/1369:1376		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_6YTF_0021/3/940:943,
1/3/1232:1234,
1/3/1334:1337		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6YTF_0031/3/952:959,
1/3/970:981,
1/3/1218:1222		No text annotation
homologous
J3_5J7L_006
NA
J3_6YTF_0041/3/987:990,
1/3/1042:1044,
1/3/1207:1212		No text annotation
homologous
J3_4LFB_005
J3_84394.1
J3_6YTF_0091/3/987:994,
1/3/1041:1044,
1/3/1207:1212		No text annotation
homologous
J3_4LFB_016
J3_28881.1
J3_6YTF_0051/3/1060:1065,
1/3/1104:1110,
1/3/1184:1190		No text annotation
homologous
J3_5J7L_008
NA
J3_6YTF_0061/3/1070:1071,
1/3/1080:1083,
1/3/1096:1099		No text annotation
geometric
J3_4LFB_017
J3_11018.1
J3_6YTF_0071/3/1113:1115,
1/3/1152:1155,
1/3/1178:1181		No text annotation
homologous
J3_5J7L_010
NA
J3_6YTF_0111/3/1113:1115,
1/3/1152:1158,
1/3/1172:1181		No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_6YTF_0081/3/1234:1238,
1/3/1293:1300,
1/3/1331:1334		No text annotation
homologous
J3_4LFB_009
J3_03192.1

Problematic loops

#loop idProblemSequence
J3_6YTF_010No text annotation

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