IL_6YTF_008
3D structure
- PDB id
- 6YTF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGCAU*AUGG
- Length
- 10 nucleotides
- Bulged bases
- 6YTF|1|3|C|1051
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YTF_008 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.3205
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
6YTF|1|3|C|1048
6YTF|1|3|U|1049
6YTF|1|3|G|1050
6YTF|1|3|C|1051
6YTF|1|3|A|1052
6YTF|1|3|U|1053
*
6YTF|1|3|A|1201
6YTF|1|3|U|1202
6YTF|1|3|G|1203
6YTF|1|3|G|1204
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14
Coloring options: