3D structure

PDB id
6YTF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
6YTF|1|3|U|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YTF_014 not in the Motif Atlas
Homologous match to IL_4LFB_050
Geometric discrepancy: 0.1932
The information below is about IL_4LFB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6YTF|1|3|C|1155
6YTF|1|3|U|1156
6YTF|1|3|G|1157
6YTF|1|3|C|1158
*
6YTF|1|3|G|1172
6YTF|1|3|A|1173
6YTF|1|3|G|1174
6YTF|1|3|G|1175
6YTF|1|3|A|1176
6YTF|1|3|A|1177
6YTF|1|3|G|1178

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain j
30S ribosomal protein S9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0557 s