IL_6YTF_018

3D structure

PDB id

6YTF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YTF_018 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6YTF|1|3|C|1300
6YTF|1|3|G|1301
6YTF|1|3|G|1302
6YTF|1|3|A|1303
6YTF|1|3|U|1304
6YTF|1|3|U|1305
*
6YTF|1|3|A|1326
6YTF|1|3|U|1327
6YTF|1|3|G|1328
6YTF|1|3|A|1329
6YTF|1|3|A|1330
6YTF|1|3|G|1331

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S13