IL_6Z1P_004
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGUAA*UGGAGAUU
- Length
- 13 nucleotides
- Bulged bases
- 6Z1P|1|Aa|A|110
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z1P_004 not in the Motif Atlas
- Geometric match to IL_4V9F_004
- Geometric discrepancy: 0.2239
- The information below is about IL_4V9F_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.1
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6Z1P|1|Aa|A|77
6Z1P|1|Aa|G|78
6Z1P|1|Aa|U|79
6Z1P|1|Aa|A|80
6Z1P|1|Aa|A|81
*
6Z1P|1|Aa|U|107
6Z1P|1|Aa|G|108
6Z1P|1|Aa|G|109
6Z1P|1|Aa|A|110
6Z1P|1|Aa|G|111
6Z1P|1|Aa|A|112
6Z1P|1|Aa|U|113
6Z1P|1|Aa|U|114
Current chains
- Chain Aa
- LSU rRNA_1
Nearby chains
- Chain AC
- 39-S ribosomal protein L47
- Chain AI
- Ribosomal protein L27
- Chain AP
- mL101
- Chain Ay
- 50S ribosomal protein L24
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