IL_6Z1P_040

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_040 not in the Motif Atlas

Homologous match to IL_4WF9_064

Geometric discrepancy: 0.143

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6Z1P|1|Ab|G|1428
6Z1P|1|Ab|G|1429
6Z1P|1|Ab|A|1430
6Z1P|1|Ab|A|1431
*
6Z1P|1|Ab|U|1712
6Z1P|1|Ab|C|1713

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain Ap

Ribosomal protein L14