IL_6Z1P_045

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6Z1P|1|Ab|C|1565

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_045 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.2411

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6Z1P|1|Ab|C|1564
6Z1P|1|Ab|C|1565
6Z1P|1|Ab|G|1566
6Z1P|1|Ab|G|1567
*
6Z1P|1|Ab|C|1621
6Z1P|1|Ab|G|1622

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2

Chain Bb

Small subunit ribosomal RNA; SSU rRNA