IL_6Z1P_047

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAAG*CCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_047 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.395

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6Z1P|1|Ab|G|1572
6Z1P|1|Ab|C|1573
6Z1P|1|Ab|A|1574
6Z1P|1|Ab|A|1575
6Z1P|1|Ab|G|1576
*
6Z1P|1|Ab|C|1612
6Z1P|1|Ab|C|1613
6Z1P|1|Ab|C|1614

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2