IL_6Z1P_049

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_049 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.2231

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

6Z1P|1|Ab|G|1652
6Z1P|1|Ab|C|1653
*
6Z1P|1|Ab|G|1683
6Z1P|1|Ab|C|1684
6Z1P|1|Ab|A|1685
6Z1P|1|Ab|U|1686

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain BC

mS38