IL_6Z1P_056

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAU*AAAGA

Length

9 nucleotides

Bulged bases

6Z1P|1|Ab|G|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_056 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.1862

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6Z1P|1|Ab|U|1800
6Z1P|1|Ab|U|1801
6Z1P|1|Ab|A|1802
6Z1P|1|Ab|U|1803
*
6Z1P|1|Ab|A|1929
6Z1P|1|Ab|A|1930
6Z1P|1|Ab|A|1931
6Z1P|1|Ab|G|1932
6Z1P|1|Ab|A|1933

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AB

Ribosomal protein L28

Chain Ac

Ribosomal protein L2