IL_6Z1P_065

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6Z1P|1|Ab|G|2270, 6Z1P|1|Ab|A|2271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_065 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.1852

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6Z1P|1|Ab|C|2204
6Z1P|1|Ab|U|2205
6Z1P|1|Ab|C|2206
*
6Z1P|1|Ab|G|2268
6Z1P|1|Ab|U|2269
6Z1P|1|Ab|G|2270
6Z1P|1|Ab|A|2271
6Z1P|1|Ab|G|2272

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AD

bL32m

Chain Ad

50S ribosomal protein L3