IL_6Z1P_067

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6Z1P|1|Ab|A|2236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_067 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.165

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6Z1P|1|Ab|U|2216
6Z1P|1|Ab|G|2217
*
6Z1P|1|Ab|C|2234
6Z1P|1|Ab|A|2235
6Z1P|1|Ab|A|2236
6Z1P|1|Ab|G|2237

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AG

Ribosomal protein

Chain Ao

50S ribosomal protein L13