IL_6Z1P_071

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAGUAC*GGACUA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_071 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.125

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6Z1P|1|Ab|U|2346
6Z1P|1|Ab|U|2347
6Z1P|1|Ab|A|2348
6Z1P|1|Ab|G|2349
6Z1P|1|Ab|U|2350
6Z1P|1|Ab|A|2351
6Z1P|1|Ab|C|2352
*
6Z1P|1|Ab|G|2357
6Z1P|1|Ab|G|2358
6Z1P|1|Ab|A|2359
6Z1P|1|Ab|C|2360
6Z1P|1|Ab|U|2361
6Z1P|1|Ab|A|2362

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain Ag

Ymf60

Chain Ao

50S ribosomal protein L13