IL_6Z1P_073

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UU*ACGG

Length

6 nucleotides

Bulged bases

6Z1P|1|Ab|C|2410, 6Z1P|1|Ab|G|2411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_073 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.2109

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6Z1P|1|Ab|U|2389
6Z1P|1|Ab|U|2390
*
6Z1P|1|Ab|A|2409
6Z1P|1|Ab|C|2410
6Z1P|1|Ab|G|2411
6Z1P|1|Ab|G|2412

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain As

50S ribosomal protein L17