IL_6Z1P_085

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUA*UUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_085 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3406

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6Z1P|1|Ba|A|149
6Z1P|1|Ba|A|150
6Z1P|1|Ba|U|151
6Z1P|1|Ba|A|152
*
6Z1P|1|Bb|U|238
6Z1P|1|Bb|U|239
6Z1P|1|Bb|U|240

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain BE

mS45

Chain BL

SelR domain protein

Chain Bp

30S ribosomal protein S16

Chain Bq

30S ribosomal protein S17