IL_6Z1P_088

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UA*UUUA

Length

6 nucleotides

Bulged bases

6Z1P|1|Bb|U|221, 6Z1P|1|Bb|U|222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_088 not in the Motif Atlas

Geometric match to IL_4LFB_005

Geometric discrepancy: 0.2039

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6Z1P|1|Ba|U|205
6Z1P|1|Ba|A|206
*
6Z1P|1|Bb|U|220
6Z1P|1|Bb|U|221
6Z1P|1|Bb|U|222
6Z1P|1|Bb|A|223

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain BD

IGR motif protein

Chain Bv

mS26

Chain Bz

mS34