IL_6Z1P_093

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GA*UGUUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_093 not in the Motif Atlas

Homologous match to IL_5J7L_016

Geometric discrepancy: 0.2248

The information below is about IL_5J7L_016

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6Z1P|1|Bb|G|317
6Z1P|1|Bb|A|318
*
6Z1P|1|Bb|U|329
6Z1P|1|Bb|G|330
6Z1P|1|Bb|U|331
6Z1P|1|Bb|U|332
6Z1P|1|Bb|C|333

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ba

SSU rRNA_1

Chain Bl

Ribosomal protein S12

Chain Bo

30S ribosomal protein S15

Chain Bp

30S ribosomal protein S16