IL_6Z1P_114

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAU*AGGG

Length

7 nucleotides

Bulged bases

6Z1P|1|Bb|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_114 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2197

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Bb|C|818
6Z1P|1|Bb|A|819
6Z1P|1|Bb|U|820
*
6Z1P|1|Bb|A|834
6Z1P|1|Bb|G|835
6Z1P|1|Bb|G|836
6Z1P|1|Bb|G|837

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BB

mS37

Chain Br

Ribosomal protein S18

Chain Bt

bS21m

Chain Bu

mS23