IL_6Z1P_117

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_117 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.45

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6Z1P|1|Bb|G|931
6Z1P|1|Bb|G|932
*
6Z1P|1|Bb|C|1238
6Z1P|1|Bb|A|1239
6Z1P|1|Bb|C|1240

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bm

Ribosomal protein S13

Chain Bs

Ribosomal protein S19