IL_6Z1P_118

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUA*UUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_118 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1222

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6Z1P|1|Bb|U|976
6Z1P|1|Bb|U|977
6Z1P|1|Bb|U|978
6Z1P|1|Bb|A|979
*
6Z1P|1|Bb|U|1012
6Z1P|1|Bb|U|1013
6Z1P|1|Bb|U|1014
6Z1P|1|Bb|A|1015

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BU

mS89

Chain BX

Ribosomal protein S3