IL_6Z1P_127

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_127 not in the Motif Atlas

Geometric match to IL_4P3T_001

Geometric discrepancy: 0.1494

The information below is about IL_4P3T_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6Z1P|1|Bb|U|1108
6Z1P|1|Bb|U|1109
6Z1P|1|Bb|A|1110
*
6Z1P|1|Bb|U|1126
6Z1P|1|Bb|U|1127
6Z1P|1|Bb|A|1128

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BA

Ribosomal subunit protein

Chain Bi

Ribosomal protein S9

Chain Bj

Ymf59