IL_6Z1P_129

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_129 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.1481

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6Z1P|1|Bb|U|1161
6Z1P|1|Bb|U|1162
6Z1P|1|Bb|G|1163
*
6Z1P|1|Bb|C|1172
6Z1P|1|Bb|U|1173
6Z1P|1|Bb|G|1174

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bf

30S ribosomal protein S5

Chain Bi

Ribosomal protein S9

Chain Br

Ribosomal protein S18

Chain Bt

bS21m

Chain Bw

Ribosomal death-associated protein