IL_6Z1P_133

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6Z1P|1|Bb|C|1411, 6Z1P|1|Bb|A|1571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_133 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1952

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Bb|C|1410
6Z1P|1|Bb|C|1411
6Z1P|1|Bb|G|1412
*
6Z1P|1|Bb|C|1569
6Z1P|1|Bb|A|1570
6Z1P|1|Bb|A|1571
6Z1P|1|Bb|G|1572

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BC

mS38

Chain Bk

Ymf61