IL_6Z1P_136

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6Z1P|1|Bb|A|1561

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_136 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2037

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Bb|C|1418
6Z1P|1|Bb|A|1419
6Z1P|1|Bb|C|1420
*
6Z1P|1|Bb|G|1559
6Z1P|1|Bb|A|1560
6Z1P|1|Bb|A|1561
6Z1P|1|Bb|G|1562

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Bl

Ribosomal protein S12