IL_6Z1P_137

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAAG*UAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_137 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1958

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6Z1P|1|Bb|A|1427
6Z1P|1|Bb|A|1428
6Z1P|1|Bb|A|1429
6Z1P|1|Bb|G|1430
*
6Z1P|1|Bb|U|1549
6Z1P|1|Bb|A|1550
6Z1P|1|Bb|A|1551
6Z1P|1|Bb|U|1552

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain BC

mS38

Chain Bl

Ribosomal protein S12