IL_6Z1P_141
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAAAAAC*GAAAAGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z1P_141 not in the Motif Atlas
- Geometric match to IL_3D0U_003
- Geometric discrepancy: 0.144
- The information below is about IL_3D0U_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6Z1P|1|Bb|U|1450
6Z1P|1|Bb|G|1451
6Z1P|1|Bb|A|1452
6Z1P|1|Bb|A|1453
6Z1P|1|Bb|A|1454
6Z1P|1|Bb|A|1455
6Z1P|1|Bb|A|1456
6Z1P|1|Bb|C|1457
*
6Z1P|1|Bb|G|1522
6Z1P|1|Bb|A|1523
6Z1P|1|Bb|A|1524
6Z1P|1|Bb|A|1525
6Z1P|1|Bb|A|1526
6Z1P|1|Bb|G|1527
6Z1P|1|Bb|U|1528
6Z1P|1|Bb|A|1529
6Z1P|1|Bb|G|1530
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain Ab
- Large subunit ribosomal RNA; LSU rRNA
- Chain At
- bL19m
- Chain BV
- mS90
- Chain BY
- mS93
Coloring options: