IL_6Z1P_167

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UACA*UGA

Length

7 nucleotides

Bulged bases

6Z1P|1|Bb|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_167 not in the Motif Atlas

Geometric match to IL_8C3A_427

Geometric discrepancy: 0.1406

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6Z1P|1|Bb|U|505
6Z1P|1|Bb|A|506
6Z1P|1|Bb|C|507
6Z1P|1|Bb|A|508
*
6Z1P|1|Bb|U|533
6Z1P|1|Bb|G|534
6Z1P|1|Bb|A|535

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bd

Ymf64

Chain Bl

Ribosomal protein S12

Chain By

mS33