IL_6Z1P_174

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_174 not in the Motif Atlas

Homologous match to IL_4LFB_061

Geometric discrepancy: 0.3157

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6Z1P|1|Bb|A|1436
6Z1P|1|Bb|A|1437
6Z1P|1|Bb|U|1438
*
6Z1P|1|Bb|A|1541
6Z1P|1|Bb|G|1542
6Z1P|1|Bb|U|1543

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

Ribosomal protein L14

Chain Bq

30S ribosomal protein S17