IL_6Z1P_185

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUU*GAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_185 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.1979

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6Z1P|1|Bb|G|665
6Z1P|1|Bb|A|666
6Z1P|1|Bb|U|667
6Z1P|1|Bb|U|668
*
6Z1P|1|Bb|G|702
6Z1P|1|Bb|A|703
6Z1P|1|Bb|G|704
6Z1P|1|Bb|C|705

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain AB

Ribosomal protein L28

Chain Ac

Ribosomal protein L2

Chain Bg

Ribosomal protein S6

Chain Bk

Ymf61

Chain Br

Ribosomal protein S18

Chain Bt

bS21m