IL_6Z6J_037

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

6Z6J|1|C1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_037 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.5091

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6Z6J|1|C1|C|977
6Z6J|1|C1|G|978
6Z6J|1|C1|U|979
6Z6J|1|C1|A|980
6Z6J|1|C1|U|981
*
6Z6J|1|C1|A|1102
6Z6J|1|C1|A|1103
6Z6J|1|C1|G|1104

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7-A

Chain LQ

60S ribosomal protein L18-A

Chain Lb

60S ribosomal protein L29