3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UGACGAAG*UCGAA
Length
13 nucleotides
Bulged bases
6Z6J|1|C1|C|1391
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_060 not in the Motif Atlas
Homologous match to IL_8C3A_063
Geometric discrepancy: 0.093
The information below is about IL_8C3A_063
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

6Z6J|1|C1|U|1388
6Z6J|1|C1|G|1389
6Z6J|1|C1|A|1390
6Z6J|1|C1|C|1391
6Z6J|1|C1|G|1392
6Z6J|1|C1|A|1393
6Z6J|1|C1|A|1394
6Z6J|1|C1|G|1395
*
6Z6J|1|C1|U|1415
6Z6J|1|C1|C|1416
6Z6J|1|C1|G|1417
6Z6J|1|C1|A|1418
6Z6J|1|C1|A|1419

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
60S ribosomal protein L4-A
Chain LE
60S ribosomal protein L6-A
Chain LP
60S ribosomal protein L17-A
Chain LY
60S ribosomal protein L26-A
Chain Le
60S ribosomal protein L32

Coloring options:


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